Oil palm compact variety has many desired trait for oil palm breeding program. There are some public raw sequencing data of oil palm compact variety that have been deposited in DDBJ.
We can explore this data to get the whole profile of oil palm compact variety.
oil palm, compact, genome
To obtain genomics profile from oil palm compact variety.
1. De-novo assembly will use SPAdes.
2. Mapping genomics reads will use bowtie or BWA.
3. Converting SAM to BAM will use samtools.
4. SNP calling will use GATK.
Yogo A. Nugroho
20 core processors, 256 GB RAM, 1 TB storage.
13/08/2018 - 13/08/2019